For anyone looking to configure the size of the anti-replay window (aka replay protection window) when using automatic keying for IPsec with racoon ... you can't. For evidence, search for sa_args.wsize in the following source code:
http://ipsec-tools.sourcearchive.com/documentation/0.7/racoon_2pfkey_8c-source.html and note that it's got a magic number of 4. GRR! Damn magic numbers! I suppose the next step is to replace racoon with a different ISAKMP daemon.
Also of note is that even if you do manual keying (which causes all sorts of other issues) you can barely get the anti-replay window large enough under Linux to meet the RFCs. The RFC for ESP states that you must support an anti-replay window of at least 32 packets, and the default should be 64. As noted in
this bug report, Linux can't support over 32. They're not intending to fix it.