Brothers and Comrades in Arms by schneefink
Stargate Atlantis | AU | Novelette, complete

After the fall of Sateda, Ronon gathers allies in his fight against the Wraith.

I, Rodney by Alex
Stargate Atlantis | Season 1 AU | Novel, complete

An AU in which Rodney is a robot.

See No Evil by Greyias
Stargate Atlantis | AU | Novel, complete

In a world with no Stargate program, Sheppard gets a civilian job as a test pilot - but secrets surround both the company and new scientist Rodney McKay.

Retrograde | Recovery by Martha Wilson
Stargate SG-1/Atlantis | AU | Novel, complete

After three years with no contact from the Atlantis team, the SGC sends a ship to investigate.