Ugh so I figured it was only a matter of time until I did this but this fandom has such a chaotic way of writing fics so this is mostly for me to help keep track of the fics I've read or want to read.
A Little Too Much of that Poison, Baby by afastmachine
How bad can it be to have a little fun with the charming man offering a drink and a wink? The answer? Very bad.
A Modern Day Courtship by bemusedbicycle
A collection of drabbles highlighting Emma and Killian’s struggle to navigate through 21st century dating. Drabbles will not necessarily be in chronological order.
All We'd Ever Need by Montana-Rosalie
Both Emma's and Killian's dreams crumble on the same night. They find comfort in each other.
Castles in the Sand by allycat22
She's the daughter of Snow White and Prince Charming, princess of the realm. He's the nephew of King Triton, ruler of the sea. They were never supposed to know about each other, let alone meet. But they did and now they're in deeper than either of them ever planned. Together, Emma and Killian will have to face what it means to be a princess and a merman with or without one another
Come Back to Me by Montana-Rosalie
Killian loses all his memories. Emma is the only one who can help him remember.
The Daring and the Devious by ForPony39
Hook must escape through the dark forest to avoid the law on his heels - but no one braves the dark forest and lives to tell the tale. Not unless Emma Swan, 'The Guide' braves it with you. Under the threat of the forests many dangers, games are being played for power and perhaps even love. Are either what they seem? What will determine victory when the games are all played out?
Sequel:
Of Mirrors and Marionettes Dirty, Pretty Thing by You-drive-me-nuts-miller
Emma Swan wants to escape her life, move East, start new. Working at The Velvet Rope is her ticket out of here. But then he comes along, mysterious, sexy, dangerous. Surely she can resist his charms?
Every Monday Night by AppleJackDaniels
"Therapy session with Dr. Hopper," she would tell Neal as she slipped out of the door, stealing her way in the moonlight on her trek to the Jolly Roger. "It's just a one-time thing," she would tell Killian as she crept into his cabin, falling into his bed, seeking a comforting warmth she hadn't felt since the last time she'd been with him. "This won't happen again."
Four Seasons by shlulesaddict77
It was supposed to be one passionate night with an insanely hot guy in a hotel room. She vanished out of the room at the crack of dawn, intend to never see him again but she didn't take his tenacity into account.
Freaky Friday by msgenevieve447
Realising you've packed the wrong shoes to go with your skirt and you have to rethink your whole outfit is bad enough. Being holed up in a hotel bathroom while you get changed into said outfit because you're suddenly sharing your room with a strange British man is a whole lot worse.
I Almost Do by ihearttvsnark
Emma and Henry say goodbye to their friends and family and escape Storybrooke as Regina's magic defeats Pan's curse and sends everyone back to the Enchanted Forest. Or at least that was what was supposed to happen, but when Emma wakes up the next morning, she discovers that something went very wrong with the plan.
It Was My Destiny to Love (and Say Goodbye) by niniadepapa
Emma gives up her happy ending in exchange of everybody else's, who go back to the Enchanted Forest and have no memory of her - until Killian starts dreaming of a strange, yet familiar woman.
Lend Me Some Sugar, I Am Your Neighbor by bemused bicycle
Killian and Emma knew each other in middle school before she was taken away to a new foster home. They meet each other again years later as neighbors in an apartment complex.
Linked by Nenny
Emma really should have known better than to accept a gift from Captain Hook, especially a magical one. He really should have known better than to underestimate her.
Love Potion Number Nine by Alexandra Lyman
After defeating the Wicked Witch and returning to the Enchanted Forest, a prince arrives with the goal of winning Emma's hand in marriage. He attempts to snare her with a love potion, but Hook intervenes and winds up activating the potion himself, causing Emma to fall in love with him. The effect is temporary, but it's going to be a hell of a ride until it wears off.
Mismatched Socks by bemusedbicycle
In which Henry attempts to explain his crazy family to his girlfriend. Oh, and she doesn't know they are fairy tale characters.
More Than You Bargained For by A Whisper Of Grace
A year after their break up, Neal is back in town and determined to get Emma to speak to him. She wants to show him that she doesn't want or need him back in her life, and reluctantly enlists Killian's help to do so.
The Path that Moonbeams Make by KnifeEdge
Emma likes to sleep with her window open. She never quite realized who she'd be inviting in. All things considered, however, Captain Hook showing up in her bedroom after midnight is hardly the worst of his offenses. Emma knows how to handle Hook.
Provocateur by swaggercaptain
Criminal Minds AU - Emma and Killian are partners in a BAU unit, but behind the innuendos and good-natured quips lays a dangerous game of cloak and dagger. When all is said and done and the perpetrator is put away, how deep does their partnership go?
Put Me in Coach, I'm Ready to Play by bemusedbicycle
Emma is the new head of PR for the Pittsburgh Pirates and her first task is to get playboy shortstop Killian Jones under control.
Round and Round by bemusedbicycle
Emma is a princess in the Enchanted Forest. Killian works in the kitchens. They are best friends and Emma is desperately trying to convince herself that's all she feels towards him. Lieutenant Duckling (Young!Emma/Killian) AU.
Second Star to the Right by Rhianna-Aurora
Based on the path of the Tarot's Major Arcana. Every journey starts with a single step. Emma never left Killian up the beanstalk, instead, they went back to Storybrooke together. Now Emma's finding herself increasingly drawn to the infuriating pirate captain, and a series of events that neither one of them could have predicted has been set into motion.
Stay With Me by Montana-Rosalie
Killian has lost the will to live. Emma walks into his life and turns everything upside down.
Straight to You by Montana-Rosalie
Emma would rather be cursed than lose Killian for good. And so they are.
There You'll Be by Montana-Rosalie
Emma doesn't date pilots. Everything changes when she meets Killian.
Those Dark Moments Before Dawn by jaded diva
Emma returns to the Enchanted Forest as the Savior, but what she really needs is to save herself. Speculation on what happens after 3x12.
The Ticking Compass by thebluecray0n
She's a princess and there's a pirate on her balcony.
Turn My World Around by Montana-Rosalie
Another curse hits and takes Emma to a new, horrible land. Hook can't let her face it alone. [zombies]
Two Pink Lines by lovingcaptainswan
A Captain Swan series based around Emma's pregnancy with Killian Jones' child, spanning from positive pregnancy test to birth.
Wednesday by Madj
She knew it was Wednesday, because it had been Wednesday every morning for the last four days, and she was the only one who seemed to notice. AU for the end of 3.11; Regina stops the curse, but there are consequences.
White Light On A Black Sea by TaarnaT
A Captain Swan story with a Black Sails twist. Princess Emma is on her way to her wedding when her ship is attacked by the Jolly Roger. Captured by ruthless pirates and miles from home, she is subject to the mercy of the handsome and dangerous Captain Hook. These aren't the fairytale pirates you know. Will contain very mature themes. Dark!Hook/Princess Emma
You Give Me Fever by ForPony39
Emma didn't get sick often, but when she did she really got sick. Who can help when she can't help herself?