These aren't necessarily my all-time favorites from Season Three, but they're the three exchanges I pulled out for our SGA: Johnny Are You Queer discussion that's been taking place around LJ and at various cons.
~Tao of Rodney~
McKAY (smiling, his eyes still closed): You love me? Really? All of you?
SHEPPARD (awkwardly): In a way a friend feels about another friend.
~Sunday~
SHEPPARD: Year and a half? You ever hang out with anyone else besides me and Teyla? I’m not saying we’re sick of you or anything. I dunno -- are you datin’ anyone?
DEX: You mean like a woman?
SHEPPARD: Or a man. (He shrugs.)
~First Strike~
ZELENKA (sulkily): If we survive this, I’m putting in for a transfer.
McKAY: Oh, please. We both know that you’ve done your best work under me.
ZELENKA (raising his head out of his hand indignantly): Under you?! I’m my own department head, you know.
McKAY: Please! We both know that department is a joke.
ZELENKA: What?!
SHEPPARD: Why don’t you two guys just make out and get it over with, huh?
(The other two stare at him.)